This 2 x 2 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.
Some analyses are
- Integrated 3D molecular viewer
- 2 types of alignments
- Phylogenetics
- Secondary protein structure prediction
- Signal Peptide Prediction (SignalP)
- Transmembrane helix prediction (TMHMM)
- Motif search (known patterns)
- Motif search using regular expressions
- Motif search using ProSite patterns
- Pattern discovery (unknown patterns)
- Web based BLAST
- BLAST on local databases
- Batch processing of multiple analyses in one work-step
- Protein family analysis (PFAM)
- Dot plots
- Hydrophobicity analyses
- Antigenicity analyses
- Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed
- Log of actions/analyses performed
- 3D viewing of molecules; among others including simultanious viewing of sequence structures in 2D and 3D
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